Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| AnalysisWSAppLabImplService | Protein Pairwise Alignment | Analysis | SOAP, Soaplab | |
| EMBOSS matcher (REST) | Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS matcher (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS needle (REST) | Pairwise sequence alignment of DNA or protein sequences using Needleman-Wunsch global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS needle (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Needleman-Wunsch global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS stretcher (REST) | Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS stretcher (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS water (REST) | Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS water (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| engineDBService | The sevice runs the prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and [...] |
Protein Pairwise Alignment | Analysis | SOAP |
| GenesilicoProteinSilicoSOAPService | Domains, Protein Pairwise Alignment, Protein Sequence Analysis, Protein Sequence Similarity, Sequence Analysis | Analysis | SOAP | |
| HMMER | HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...] |
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats | Analysis | REST |
| jackhmmer | iteratively search a protein sequence against a protein database |
Motifs, Protein Pairwise Alignment | Analysis | SOAP |
| lalign (REST) | Local pairwise sequence alignment of DNA or protein sequences using lalign, part of the FASTA suite. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| lalign (SOAP) | Local pairwise sequence alignment of DNA or protein sequences using lalign, part of the FASTA suite. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| Palign | The ProteinALIGNment (Palign) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...] |
Protein Pairwise Alignment | Analysis | SOAP |
| Pdb | The ProteinALIGNment (Pdb) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...] |
Protein Pairwise Alignment | Analysis | SOAP |
| phmmer | search a protein sequence against a protein database |
Motifs, Protein Pairwise Alignment | Analysis | SOAP |
| runDaliLite | Authority: inb.bsc.es – Makes a pairwise structure comparison between two PDB chains. |
Protein Pairwise Alignment | Analysis | SOAP |
| WSDaliLite | DaliLite is a program for pairwise structure comparison. Compare your structure(first structure) to a reference structure(second structure). web interface: http://www.ebi.ac.uk/Tools/dalilite/ |
Protein Pairwise Alignment, Protein Structure Prediction | Analysis | SOAP |
