Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| CATH/Gene3D Database Lookup Services | The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...] |
Biology, Domains, Pathways | Analysis, Data Retrieval | SOAP |
| EMBOSS helixturnhelix | Identify nucleic acid-binding motifs in protein sequences |
Domains, Motifs, Protein Secondary Structure | Analysis | SOAP, Soaplab |
| EMBOSS rocon | Generates a hits file from comparing two DHF files |
Domains, Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| EMBOSS sigscan | Generates hits (DHF file) from a signature search |
Domains, Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| FetchProDomService | fetchProDom is a set of five different webservices that interrogates the ProDom database. fetchdom: Enter one or several (separated by [...] |
Domains | Analysis | SOAP |
| GenesilicoMetaServerSOAPService | Geneslico SOAP service for protein sequence analysis, which involve – secondary structure prediction – domain prediction – disorder prediction – [...] |
Domains, Ligand Interaction, Protein Secondary Structure, Protein Sequence Analysis | Analysis | SOAP |
| GenesilicoProteinSilicoSOAPService | Domains, Protein Pairwise Alignment, Protein Sequence Analysis, Protein Sequence Similarity, Sequence Analysis | Analysis | SOAP | |
| GlobPlot | This WSDL file describe the GlobPlot Web Service. It performs intrinsic protein disorder, domain and globularity prediction. GlobPlot: Exploring Protein [...] |
Domains | Analysis | SOAP |
| HMMER | HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...] |
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats | Analysis | REST |
| INB:inb.bsc.es:runPratt | Authority: inb.bsc.es – Search for patterns conserved in a set of protein sequences. |
Domains, Motifs | Analysis | SOAP |
| KEGG | KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes [...] |
Biology, Domains, Gene Prediction, Ligand Interaction, Motifs, Pathways | Analysis, Data Retrieval, Identifier, Image | SOAP |
| MkDom2 | MkDom2 is the program used routinely to build each new release of ProDom. The algorithm relies on the assumption that [...] |
Domains | Analysis | SOAP |
| pfam | This service allows you to access and retrieve data from the pfam database. The Pfam database is a large collection [...] |
Biology, Domains, Motifs, Repeats | Analysis, Data Retrieval, Identifier | REST |
| Phobius (REST) | Transmembrane topology and signal peptides prediction from the amino acid sequence of a protein using Phobius. |
Domains, Function Prediction, Protein Secondary Structure | Analysis | REST |
| Phobius (SOAP) | Transmembrane topology and signal peptides prediction from the amino acid sequence of a protein using Phobius. |
Domains, Function Prediction, Protein Secondary Structure | Analysis | SOAP |
| SMART | SMART webservice |
Domains, Motifs | Analysis | SOAP |
| SMART | SMART webservice |
Domains | Analysis | SOAP |
| WSInterProScan | WSInterProScan: protein domain and family signature searches (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March [...] |
Domains, Function Prediction, Motifs, Repeats | Analysis | SOAP |
| WSPhobius | Phobius: prediction of transmembrane topology and signal peptides from the amino acid sequence of a protein. Note: this RPC/encoded SOAP [...] |
Domains, Function Prediction, Protein Secondary Structure, Protein Sequence Analysis | Analysis | SOAP |
