Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| Clustal Omega (SOAP) | Multiple sequence alignment using Clustal Omega. |
Protein Multiple Alignment | Analysis | SOAP |
| ClustalW2 (REST) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| ClustalW2 (SOAP) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| ClustalW2 Phylogeny (REST) | Create Neighbor-joining or UPGMA phylogentic trees from a multiple sequence alignment using ClustalW. This service separates the phylogeny features of [...] |
Phylogeny | Analysis | REST |
| ClustalW2 Phylogeny (SOAP) | Create Neighbor-joining or UPGMA phylogentic trees from a multiple sequence alignment using ClustalW. This service separates the phylogeny features of [...] |
Phylogeny | Analysis | SOAP |
| DbClustal (REST) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | REST |
| DbClustal (SOAP) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | SOAP |
| dbfetch | This service has moved. Please see http://www.biocatalogue.org/services/2748 for details of the current service and its endpoints. |
Biology | Data Retrieval, Literature | REST |
| dbfetch | Dbfetch is an acronym for “database fetch”. Dbfetch provides an easy way to retrieve entries from various databases available at [...] |
Biology | Data Retrieval | REST |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| EMBOSS matcher (REST) | Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS matcher (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS needle (REST) | Pairwise sequence alignment of DNA or protein sequences using Needleman-Wunsch global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS needle (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Needleman-Wunsch global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS stretcher (REST) | Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS stretcher (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS water (REST) | Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS water (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| FASTM (REST) | The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching protein databases with a set of short [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | REST |
| FASTM (SOAP) | The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching protein databases with a set of short [...] |
Protein Sequence Similarity | Analysis | SOAP |
